IQ-TREE multicore version 2.0.3 for Linux 64-bit built Apr 26 2020
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    cn47 (AVX2, FMA3, 125 GB RAM)
Command: /home/smg655/.conda/envs/iqtree/bin/iqtree -t All_Species_m2_CDS_BS.nwk -s All_Species_m2_CDS.nexus --scf 100 --prefix concord_CDS -T 2
Seed:    797237 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Wed Apr  7 13:19:04 2021
Kernel:  AVX+FMA - 2 threads (2 CPU cores detected)

Reading alignment file All_Species_m2_CDS.nexus ... Nexus format detected
Alignment has 26 sequences with 136821 columns, 61245 distinct patterns
136619 parsimony-informative, 0 singleton sites, 202 constant sites
WARNING: Some sequence names are changed as follows:
ActMar  TC -> ActMar__TC
AldGig  TC -> AldGig__TC
ApaSpi  NN -> ApaSpi__NN
BatTri  TC -> BatTri__TC
CarIns  TT -> CarIns__TT
CheAbi  TC -> CheAbi__TC
CheMyd  TC -> CheMyd__TC
CheSer  TC -> CheSer__TC
ChrPic  TC -> ChrPic__TC
CuoAmb  TC -> CuoAmb__TC
CuoMcc  TC -> CuoMcc__TC
DerCor  TC -> DerCor__TC
DerMaw  TC -> DerMaw__TC
EmyOrb  TC -> EmyOrb__TC
EmySub  CT -> EmySub__CT
GopAga  TC -> GopAga__TC
MalTer  TC -> MalTer__TC
MauRee  TC -> MauRee__TC
MesTub  CC -> MesTub__CC
PelCas  CC -> PelCas__CC
PelSin  NN -> PelSin__NN
PlaMeg  TC -> PlaMeg__TC
PodExp  CC -> PodExp__CC
SteCar  TC -> SteCar__TC
TerCar  TC -> TerCar__TC
TraScr  TC -> TraScr__TC

            Gap/Ambiguity  Composition  p-value
   1  ActMar__TC    2.24%    failed      0.00%
   2  AldGig__TC    1.89%    failed      0.00%
   3  ApaSpi__NN    1.49%    passed     12.49%
   4  BatTri__TC   49.79%    passed     38.19%
   5  CarIns__TT    3.76%    passed     54.99%
   6  CheAbi__TC    7.77%    failed      0.00%
   7  CheMyd__TC    0.60%    passed     41.74%
   8  CheSer__TC    3.93%    failed      0.00%
   9  ChrPic__TC    1.11%    failed      2.35%
  10  CuoAmb__TC    3.42%    passed     22.04%
  11  CuoMcc__TC    1.11%    failed      0.53%
  12  DerCor__TC    0.89%    failed      0.00%
  13  DerMaw__TC    2.42%    failed      0.01%
  14  EmyOrb__TC   42.83%    failed      0.00%
  15  EmySub__CT    1.71%    passed     38.99%
  16  GopAga__TC    0.65%    failed      0.00%
  17  MalTer__TC    8.15%    failed      4.97%
  18  MauRee__TC    0.50%    failed      0.53%
  19  MesTub__CC    3.49%    failed      4.70%
  20  PelCas__CC    2.46%    failed      0.00%
  21  PelSin__NN    1.61%    failed      0.00%
  22  PlaMeg__TC    0.74%    failed      0.00%
  23  PodExp__CC    4.51%    failed      0.00%
  24  SteCar__TC    3.11%    failed      0.00%
  25  TerCar__TC    2.32%    failed      0.00%
  26  TraScr__TC    0.93%    failed      0.30%
****  TOTAL         5.90%  20 sequences failed composition chi2 test (p-value<5%; df=3)
Reading tree All_Species_m2_CDS_BS.nwk ...
un-rooted tree with 26 taxa and 49 branches
Computing site concordance factor...
1.017 sec
Tree with concordance factors written to concord_CDS.cf.tree
Annotated tree (best viewed in FigTree) written to concord_CDS.cf.tree.nex
Tree with branch IDs written to concord_CDS.cf.branch
Concordance factors per branch printed to concord_CDS.cf.stat
Date and Time: Wed Apr  7 13:19:06 2021
